Master catalog of every page in this wiki, with a one-line summary each. Read first when answering a
question. Source counts are reconciled from page frontmatter, never incremented — see
CLAUDE.md § Derived values.
Status: scaffold only. No sources ingested. All category sections are empty by design, not by omission.
Sources
One page per paper, protocol, OMIP, guideline or vendor note. tier and detector_class are
recorded in each page’s frontmatter and govern how its claims are weighted.
(none yet — three PDFs await ingest in raw/; see state.md Queue)
| Page | Tier | Detector | Year |
|---|---|---|---|
| — | — | — | — |
Metrics
Quantities with definitions, formulas, competing definitions across sources, and
literature-stated acceptance thresholds. Every page here carries a ## Recommendation.
(none yet)
Reagents
Fluorochromes, tandem dyes, bead types and buffers.
(none yet)
Procedures
Things you do: voltration, titration, compensation setup, FMO and other controls, daily QC,
linearity, laser delay, area scaling. Every page here carries a ## Recommendation.
(none yet)
Concepts
Principles you need to understand — spillover vs spread, dynamic range, autofluorescence, photoelectron statistics — and hardware components (PMT, dichroic, filter, laser). Hardware splits into its own folder if it exceeds 8 pages.
(none yet)
Analyses
Curator-directed syntheses.
| Page | What it answers |
|---|---|
| Notable Findings | Running log of recommendations that contradict current practice or would change a panel in use |
Planned (targets, not yet built — see state.md Watch Items):
Instrument Validation Checklist (PMT Analyser)— ordered, each step citing its source and the literature’s acceptance criterionPanel Design Procedure— marker list to fluorochrome assignment, each rule traced to a source